Identification of Hippophae species (Shaji) through DNA barcodes

Liu, Yue; Sun, Wei; Liu, Chuan; Zhang, Yaqin; Chen, Yilong; Song, Ming; Fan, Gang; Liu, Xia; Xiang, Li; Zhang, Yi

doi:10.1186/s13020-015-0062-9

Chinese Medicine

Table 1 Hippophae samples for testing potential barcodes

From: Identification of Hippophae species (Shaji) through DNA barcodes

Scientific name	Haplotype		Voucher no.	Location	GenBank no.
Scientific name	ITS2	psbA-trnH	Voucher no.	Location	ITS2	psbA-trnH
H. rhamnoides subsp. sinensis	A1	M1	YC0546MT01	Wanlin, Jinchuan, Sichuan, China	KJ843997	KJ854997
	A2	M2	YC0546MT02	Maierma, Aba, Sichuan, China	KJ843998	KJ854998
	A2	M1	YC0546MT03	Shili, Songpan, Sichuan,China	KJ843999	KJ854999
	A2	M1	YC0546MT04	Rongrida, Rangtang, Sichuan, China	KJ844000	KJ855041
	A1	M3	YC0546MT05	Nanmenxia, Huzhu, Qinghai, China	KJ844001	KJ855000
	A1	M3	YC0546MT06	Puxi, Lixian, Sichuan, China	KJ844002	KJ855001
	A1	M3	YC0546MT07	Puxi, Lixian, Sichuan, China	KJ844003	KJ855002
	A2	M4	YC0546MT08	Chaka, Wulan, Qianghai, China	KJ844004	KJ855003
	A2	M5	YC0546MT09	Gatuo, Mangkang, Tibet, China	KJ844005	KJ855004
	A2	M1	YC0546MT10	Aba, Aba, Sichuan, China	KJ844006	KJ855005
	A2	M1	YC0546MT11	Luoerda, Aba, Sichuan, China	KJ844007	KJ855006
	A2	M3	YC0546MT12	Kehe, Aba, Sichuan, China	KJ844008	KJ855007
	A2	M3	YC0546MT13	Nawu, Hezuo, Gansu, China	KJ844009	KJ855008
	A1	M6	YC0546MT14	Laya, Kangding, Sichuan, China	KJ844010	KJ855009
	A2	M1	YC0546MT15	Chuanzhusi, Songpan, Sichuan, China	KJ844011	KJ855010
	A1	M1	YC0546MT16	Rilong, Xiaojin, Sichuan, China	KJ844012	KJ855011
	A1	M1	YC0546MT17	Fubian, Xiaojin, Sichuan, China	KJ844013	KJ855012
	A1	M1	YC0546MT18	Dawei, Xiaojin, Sichuan, China	KJ844014	KJ855013
	A2	M7	YC0546MT19	Baihuashan, Beijing, China	KM047400	KM047406
	A2	M7	YC0546MT20	Baihuashan, Beijing, China	KM047401	KM047407
	A2	M7	YC0546MT21	Baihuashan, Beijing, China	KM047402	KM047408
	A2	M7	YC0333MT09	Beijing, China	KM047403	KM047409
	A2	M7	YC0333MT10	Beijing, China	KM047404	KM047410
	A2	M2	FDC112^a	National Institute for Food and Drug Control, China	KM047405	KM047411
H. rhamnoides subsp. mongolica	B1	N1	YC0547MT01	Buerjin, Altay, Xinjiang, China	KJ843986	KJ855021
	B1	N1	YC0547MT02	Buerjin, Altay, Xinjiang, China	KJ843987	KJ855022
	B1	N1	YC0547MT03	Buerjin, Altay, Xinjiang, China	KJ843988	KJ855023
H. rhamnoides subsp. yunnanensis	C1	O1	YC0548MT01	Gu, Bomi, Tibet, China	KJ817423	KJ854989
	C1	O1	YC0548MT02	Rewa, Milin, Tibet, China	KJ817424	KJ854990
	C1	O1	YC0548MT03	Rewa, Milin, Tibet, China	KJ817425	KJ854991
	C2	O1	YC0548MT04	Jiantang, Shangri-La, Yunnan, China	KJ939408	KJ939410
	C2	O1	YC0548MT05	Jiantang, Shangri-La, Yunnan, China	KJ939409	KJ939411
H. rhamnoides subsp. turkestanica	D1	P1	YC0549MT01	Aotebeixi, Wushi, Xinjiang, China	KJ844038	KJ855017
	D1	P1	YC0549MT02	Aotebeixi, Wushi, Xinjiang, China	KJ844039	KJ855018
	D1	P2	YC0549MT03	Tucheng, Zhada, Tibet, China	KJ844040	KJ855019
	D1	P2	YC0549MT04	Tucheng, Zhada, Tibet, China	KJ844041	KJ855020
H. rhamnoides subsp. wolongensis	E1	R1	YC0550MT01	Taiping, Maoxian, Sichuan, China	KJ844024	KJ855038
	E1	R1	YC0550MT02	Taiping, Maoxian, Sichuan, China	KJ844025	KJ855039
	E1	R1	YC0550MT03	Taiping, Maoxian, Sichuan, China	KJ844026	KJ855040
H. rhamnoides subsp. caucasia	DLA1	–	–	GenBank	JQ663574	–
	DLA1	–	–	GenBank	JQ663578	–
	DLA1	–	–	GenBank	JQ663579	–
	DLA1	–	–	GenBank	JQ663580	–
H. rhamnoides subsp. rhamnoide	DLB1	–	–	GenBank	AF440242	–
H. rhamnoides subsp. rhamnoide	DLB2	–	–	GenBank	JQ663575	–
H. rhamnoides subsp. carpatica	DLC1	–	–	GenBank	AF440245	–
	DLC2	–	–	GenBank	JQ663576	–
	DLC2	–	–	GenBank	JQ663577	–
H. rhamnoides subsp. fluviatilis	DLD1	–	–	GenBank	AF440248	–
H. rhamnoides subsp. fluviatilis	DLD2	–	–	GenBank	JQ289287	–
H. goniocarpa	F1	S1	YC0551MT01	Galitai, Songpan, Sichuan, China	KJ844018	KJ855027
	F1	S1	YC0551MT02	Galitai, Songpan, Sichuan, China	KJ844019	KJ855028
	F1	S1	YC0551MT03	Galitai, Songpan, Sichuan, China	KJ844020	KJ855029
H. litangensis	G1	T1	YC0552MT01	Jiawa, Litang, Sichuan, China	KJ844015	KJ854986
	G1	T1	YC0552MT02	Jiawa, Litang, Sichuan, China	KJ844016	KJ854987
	G1	T1	YC0552MT03	Jiawa, Litang, Sichuan, China	KJ844017	KJ854988
H. neurocarpa subsp. neurocarpa	H1	U1	YC0553MT01	Babao, Qilian, Qinghai, China	KJ844042	KJ854992
	H2	U2	YC0553MT02	Jiawa, Litang, Sichuan, China	KJ844043	KJ854993
	H2	U2	YC0553MT03	Jiawa, Litang, Sichuan, China	KJ844044	KJ854994
	H2	U1	YC0553MT04	Chali, Aba, Sichuan, China	KJ844045	KJ854995
	H1	U1	YC0553MT05	Maierma, Aba, Sichuan, China	KJ844046	KJ854996
H. neurocarpa subsp. stellatopilosa	I1	V1	YC0554MT01	Gaocheng, Litang, Sichuan, China	KJ844027	KJ855024
	I1	V1	YC0554MT02	Gaocheng, Litang, Sichuan, China	KJ844028	KJ855025
	I1	V1	YC0554MT03	Gaocheng, Litang, Sichuan, China	KJ844029	KJ855026
H. salicifolia	J1	W1	YC0653MT01	Lebu, Nacuo, Tibet, China	KJ844021	KJ855014
	J1	W1	YC0653MT02	Lebu, Nacuo, Tibet, China	KJ844022	KJ855015
	J1	W1	YC0653MT03	Lebu, Nacuo, Tibet, China	KJ844023	KJ855016
H. gyantsensis	K1	X1	YC0654MT01	Qiangna, Milin, Tibet, China	KJ843989	KJ855030
	K1	X1	YC0654MT02	Jieba, Naidong, Tibet, China	KJ843990	KJ855031
	K1	X1	YC0654MT03	Ridang, Longzi, Tibet, China	KJ843991	KJ855032
	K1	X1	YC0654MT04	Gangdui, Gongga, Tibet, China	KJ843992	KJ855033
	K2	X1	YC0654MT05	Pozhang, Naidong, Tibet, China	KJ843993	KJ855034
	K1	X2	YC0654MT06	Jiaxing, Gongbujiangda, Tibet, China	KJ843994	KJ855035
	K1	X1	YC0654MT07	Mozhugongka, Mozhugongka, Tibet, China	KJ843995	KJ855036
	K2	X1	YC0654MT08	Jiubu, Linzhi, Tibet, China	KJ843996	KJ855037
H. tibetana	L1	Y1	YC0655MT01	Langkazi, Langkazi, Tibet, China	KJ844030	KJ854976
	L2	Y1	YC0655MT02	Duoma, Ruoergai, Sichuan, China	KJ844031	KJ854977
	L1	Y1	YC0655MT03	Tangke, Ruoergai, Sichuan, China	KJ844032	KJ854978
	L2	Y1	YC0655MT04	Riduo, Mozhugongka, Tibet, China	KJ844033	KJ854979
	L1	Y1	YC0655MT05	Jiangrong, Hongyuan, Sichuan, China	KJ844034	KJ854980
	L1	Y2	YC0655MT06	Maiwa, Hongyuan, Sichuan, China	KJ844035	KJ854981
	L1	Y1	YC0655MT07	Nanmenxia, Huzhu, Qinghai, China	KJ844036	KJ854982
	L1	Y1	YC0655MT08	Tawa, Ruoergai, Sichuan, China	KJ844037	KJ854983
	L1	Y3	YC0655MT09	Chali, Aba, Sichuan, China	KJ855042	KJ854984
	L1	Y2	YC0655MT10	Maiwa, Hongyuan, Sichuan, China	KJ855043	KJ854985
	L1	Y1	YC0655MT11	Keledong, Dege, Sichuan, China	KJ855044	KJ854975
E. angustifolia	DLE1	–	–	GenBank	AF440256	–
E. pungens	–	DLDF1	–	GenBank	–	GQ435025

–: not acquired in this study
^aFDC112: a reference crude drug that was purchased from National Institute for Food and Drug Control

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ISSN: 1749-8546

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