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Table 3 Codon-anticodon recognition patterns and codon usage in the A. compactum cp genome

From: Complete chloroplast genome of the medicinal plant Amomum compactum: gene organization, comparative analysis, and phylogenetic relationships within Zingiberales

Amino acid Codon No. RSCU tRNA Amino acid Codon Count RSCU tRNA
Phe UUU 971 1.31   Tyr UAU 811 1.57  
Phe UUC 516 0.69 trnF-GAA Tyr UAC 221 0.43 trnY-GUA
Leu UUA 892 1.96 trnL-UAA Stop UAA 48 1.66  
Leu UUG 559 1.23 trnL-CAA Stop UAG 22 0.76  
Leu CUU 567 1.25   His CAU 519 1.6  
Leu CUC 181 0.4   His CAC 129 0.4 trnH-GUG
Leu CUA 381 0.84 trnL-UAG Gln CAA 706 1.54 trnQ-UUG
Leu CUG 151 0.33   Gln CAG 210 0.46  
Ile AUU 1146 1.47   Asn AAU 989 1.55  
Ile AUC 426 0.55 trnI-GAU Asn AAC 289 0.45 trnN-GUU
Ile AUA 763 0.98 trnI-CAU Lys AAA 1114 1.49 trnK-UUU
Met AUG 614 1 trn(f)M-CAU Lys AAG 383 0.51  
Val GUU 521 1.45   Asp GAU 875 1.64  
Val GUC 159 0.44 trnV-GAC Asp GAC 192 0.36 trnD-GUC
Val GUA 559 1.56 trnV-UAC Glu GAA 1125 1.53 trnE-UUC
Val GUG 194 0.54   Glu GAG 350 0.47  
Ser UCU 598 1.74   Cys UGU 232 1.56  
Ser UCC 337 0.98 trnS-GGA Cys UGC 66 0.44 trnC-GCA
Ser UCA 412 1.2 trnS-UGA Stop UGA 17 0.59  
Ser UCG 182 0.53   Trp UGG 452 1 trnW-CCA
Pro CCU 442 1.62   Arg CGU 365 1.37 trnR-ACG
Pro CCC 202 0.74   Arg CGC 86 0.32  
Pro CCA 325 1.19 trnP-UGG Arg CGA 342 1.29  
Pro CCG 120 0.44   Arg CGG 113 0.43  
Thr ACU 537 1.57   Arg AGA 519 1.95 trnR-UCU
Thr ACC 237 0.7 trnT-GGU Arg AGG 168 0.63  
Thr ACA 433 1.27 trnT-UGU Ser AGU 430 1.25  
Thr ACG 157 0.46   Ser AGC 102 0.3 trnS-GCU
Ala GCU 626 1.82   Gly GGU 604 1.39  
Ala GCC 203 0.59   Gly GGC 141 0.33 trnG-GCC
Ala GCA 434 1.26 trnA-UGC Gly GGA 714 1.65  
Ala GCG 112 0.33   Gly GGG 276 0.64  
  1. RSCU relative synonymous codon usage