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Table 3 Codon-anticodon recognition patterns and codon usage in the A. compactum cp genome

From: Complete chloroplast genome of the medicinal plant Amomum compactum: gene organization, comparative analysis, and phylogenetic relationships within Zingiberales

Amino acid

Codon

No.

RSCU

tRNA

Amino acid

Codon

Count

RSCU

tRNA

Phe

UUU

971

1.31

 

Tyr

UAU

811

1.57

 

Phe

UUC

516

0.69

trnF-GAA

Tyr

UAC

221

0.43

trnY-GUA

Leu

UUA

892

1.96

trnL-UAA

Stop

UAA

48

1.66

 

Leu

UUG

559

1.23

trnL-CAA

Stop

UAG

22

0.76

 

Leu

CUU

567

1.25

 

His

CAU

519

1.6

 

Leu

CUC

181

0.4

 

His

CAC

129

0.4

trnH-GUG

Leu

CUA

381

0.84

trnL-UAG

Gln

CAA

706

1.54

trnQ-UUG

Leu

CUG

151

0.33

 

Gln

CAG

210

0.46

 

Ile

AUU

1146

1.47

 

Asn

AAU

989

1.55

 

Ile

AUC

426

0.55

trnI-GAU

Asn

AAC

289

0.45

trnN-GUU

Ile

AUA

763

0.98

trnI-CAU

Lys

AAA

1114

1.49

trnK-UUU

Met

AUG

614

1

trn(f)M-CAU

Lys

AAG

383

0.51

 

Val

GUU

521

1.45

 

Asp

GAU

875

1.64

 

Val

GUC

159

0.44

trnV-GAC

Asp

GAC

192

0.36

trnD-GUC

Val

GUA

559

1.56

trnV-UAC

Glu

GAA

1125

1.53

trnE-UUC

Val

GUG

194

0.54

 

Glu

GAG

350

0.47

 

Ser

UCU

598

1.74

 

Cys

UGU

232

1.56

 

Ser

UCC

337

0.98

trnS-GGA

Cys

UGC

66

0.44

trnC-GCA

Ser

UCA

412

1.2

trnS-UGA

Stop

UGA

17

0.59

 

Ser

UCG

182

0.53

 

Trp

UGG

452

1

trnW-CCA

Pro

CCU

442

1.62

 

Arg

CGU

365

1.37

trnR-ACG

Pro

CCC

202

0.74

 

Arg

CGC

86

0.32

 

Pro

CCA

325

1.19

trnP-UGG

Arg

CGA

342

1.29

 

Pro

CCG

120

0.44

 

Arg

CGG

113

0.43

 

Thr

ACU

537

1.57

 

Arg

AGA

519

1.95

trnR-UCU

Thr

ACC

237

0.7

trnT-GGU

Arg

AGG

168

0.63

 

Thr

ACA

433

1.27

trnT-UGU

Ser

AGU

430

1.25

 

Thr

ACG

157

0.46

 

Ser

AGC

102

0.3

trnS-GCU

Ala

GCU

626

1.82

 

Gly

GGU

604

1.39

 

Ala

GCC

203

0.59

 

Gly

GGC

141

0.33

trnG-GCC

Ala

GCA

434

1.26

trnA-UGC

Gly

GGA

714

1.65

 

Ala

GCG

112

0.33

 

Gly

GGG

276

0.64

 
  1. RSCU relative synonymous codon usage