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Table 4 Simple sequence repeats in the A. compactum cp genome

From: Complete chloroplast genome of the medicinal plant Amomum compactum: gene organization, comparative analysis, and phylogenetic relationships within Zingiberales

cpSSR ID Repeat motif Length (bp) Start End Region Annotation
1 (T)10 10 3975 3984 LSC trnK-UUU
2 (A)10 10 4328 4337 LSC  
3 (TA)6 12 4900 4911 LSC  
4 (A)10 10 5287 5296 LSC rps16 intron
5 (A)11 11 6253 6263 LSC  
6 (TA)6 12 6609 6620 LSC  
7 (A)10 10 7204 7213 LSC  
8 (AT)6 12 7521 7532 LSC  
9 (A)10 10 7700 7709 LSC  
10 (T)12 12 8633 8644 LSC  
11 (A)13 13 14,885 14,897 LSC  
12 (T)10 10 17,474 17,483 LSC  
13 (A)10 10 19,831 19,840 LSC rpoC2
14 (T)11 11 24,121 24,131 LSC rpoC1 intron
15 (A)10 10 28,802 28,811 LSC  
16 (A)15 15 29,013 29,027 LSC  
17 (A)11 11 30,868 30,878 LSC  
18 (T)10 10 35,129 35,138 LSC  
19 (TA)7 14 38,632 38,645 LSC  
20 (A)12 12 39,292 39,303 LSC  
21 (A)12 12 47,481 47,492 LSC  
22 (T)10 10 48,986 48,995 LSC  
23 (A)10 10 50,236 50,245 LSC  
24 (AT)7 14 50,395 50,408 LSC  
25 (T)10 10 51,829 51,838 LSC  
26 (T)11 11 52,709 52,719 LSC  
27 (ATA)5 15 54,345 54,359 LSC  
28 (A)11 11 54,562 54,572 LSC  
29 (T)10 10 58,778 58,787 LSC  
30 (T)11 11 59,269 59,279 LSC  
31 (A)12 12 60,919 60,930 LSC  
32 (T)10 10 61,621 61,630 LSC  
33 (AT)6 12 63,489 63,500 LSC  
34 (A)12 12 68,715 68,726 LSC  
35 (AT)10 20 69,266 69,285 LSC  
36 (T)10 10 70,716 70,725 LSC  
37 (A)10 10 72,600 72,609 LSC rps18
38 (TA)7 14 74,094 74,107 LSC rps12 intron
39 (A)10 10 74,569 74,578 LSC clpP intron
40 (T)11 11 74,845 74,855 LSC clpP intron
41 (T)10 10 75,108 75,117 LSC clpP intron
42 (T)10 10 75,572 75,581 LSC clpP intron
43 (T)10 10 75,831 75,840 LSC clpP intron
44 (A)10 10 79,177 79,186 LSC  
45 (AT)6 12 79,751 79,762 LSC petB intron
46 (T)10 10 86,407 86,416 LSC rpl16 intron
47 (T)11 11 88,970 88,980 IRa  
48 (T)10 10 116,573 116,582 IRa ycf1
49 (A)11 11 120,872 120,882 SSC  
50 (T)11 11 121,055 121,065 SSC  
51 (A)11 11 128,865 128,875 SSC ndhA intron
52 (T)10 10 129,188 129,197 SSC ndhA intron
53 (AT)6 12 131,778 131,789 SSC  
54 (T)11 11 133,103 133,113 SSC  
55 (T)12 12 133,236 133,247 SSC  
56 (T)11 11 133,374 133,384 SSC ycf1
57 (A)10 10 135,507 135,516 IRb ycf1
58 (A)11 11 163,109 163,119 IRb