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Table 5 Long repeat sequences in A. compactum cp genome

From: Complete chloroplast genome of the medicinal plant Amomum compactum: gene organization, comparative analysis, and phylogenetic relationships within Zingiberales

ID Repeat start 1 Type Size (bp) Repeat start 2 Mismatch (bp) E value Gene Region
1 3990 P 34 3996 − 3 4.12E−06 trnK-UUU (intron) LSC
2 8768 P 31 48,057 − 3 1.98E−04 IGS; trnS-GGA LSC
3 10,522 F 30 39,347 − 3 7.15E−04 trnG-GCC (intron) LSC
4 31,322 P 32 31,352 − 3 5.46E−05 IGS LSC
5 32,991 F 30 33,020 − 3 7.15E−04 IGS LSC
6 39,660 P 32 39,701 0 4.08E−10 IGS LSC
7 41,551 F 58 43,775 − 3 7.54E−20 psaB; psaA LSC
8 41,595 F 37 43,819 − 2 2.39E−09 psaB; psaA LSC
9 63,481 P 31 126,101 − 3 1.98E−04 IGS LSC; SSC
10 63,481 F 31 126,106 − 3 1.98E−04 IGS LSC; SSC
11 63,487 F 32 69,264 − 3 5.46E−05 IGS LSC
12 67,809 P 31 67,864 − 2 6.83E−06 IGS LSC
13 71,632 F 30 71,659 0 6.53E−09 IGS LSC
14 72,281 F 42 72,302 − 3 1.21E−10 rps18 LSC
15 91,249 F 46 91,299 − 1 2.10E−16 trnI-CAU; IGS IRa
16 91,249 P 46 160,743 − 1 2.10E−16 trnI-CAU; IGS IRa; IRb
17 91,299 P 46 160,793 − 1 2.10E−16 IGS IRa; IRb
18 93,917 F 30 93,938 − 3 7.15E−04 ycf2 IRa
19 93,917 P 30 158,120 − 3 7.15E−04 ycf2 IRa; IRb
20 93,938 P 30 158,141 − 3 7.15E−04 ycf2 IRa; IRb
21 121,695 P 30 121,723 − 3 7.15E−04 IGS SSC
22 158,122 F 30 158,143 − 3 7.15E−04 ycf2 IRb
23 160,743 F 46 160,793 − 1 2.10E−16 IGS IRb
24 160,762 F 30 160,812 − 3 7.15E−04 IGS IRb
  1. F forward, P palindromic, IGS intergenic space