Sample ID | PE reads | Raw tags | Clean tags | Effective tags | AvgLen (bp) | GC (%) | Q20 (%) | Q30 (%) | Effective (%) |
---|---|---|---|---|---|---|---|---|---|
Normal1 | 79,826 | 71,406 | 64,172 | 62,037 | 417 | 53.94 | 97.8 | 95.68 | 77.72 |
Normal2 | 79,990 | 74,027 | 68,381 | 63,980 | 413 | 54.21 | 97.87 | 95.82 | 79.98 |
Normal3 | 79,776 | 72,191 | 64,790 | 62,138 | 416 | 53.83 | 97.92 | 95.91 | 77.89 |
Normal4 | 80,063 | 71,608 | 64,070 | 62,234 | 417 | 53.46 | 97.75 | 95.6 | 77.73 |
Cont1 | 79,857 | 71,232 | 63,420 | 60,788 | 419 | 53.66 | 97.82 | 95.75 | 76.12 |
Cont2 | 80,039 | 72,767 | 66,452 | 63,901 | 414 | 54.66 | 97.73 | 95.57 | 79.84 |
Cont3 | 79,910 | 76,987 | 73,661 | 70,123 | 416 | 52.25 | 98.0 | 96.09 | 87.75 |
Cont4 | 79,968 | 71,690 | 64,205 | 61,409 | 416 | 53.08 | 97.73 | 95.59 | 76.79 |
Cont5 | 80,087 | 73,036 | 66,707 | 65,195 | 415 | 54.33 | 97.92 | 95.85 | 81.41 |
Cont6 | 79,946 | 69,589 | 60,860 | 59,843 | 421 | 53.91 | 97.82 | 95.7 | 74.85 |
JSD1 | 79,697 | 73,088 | 66,970 | 64,768 | 416 | 54.22 | 97.81 | 95.7 | 81.27 |
JSD2 | 80,075 | 73,609 | 67,315 | 63,416 | 415 | 53.59 | 97.88 | 95.85 | 79.2 |
JSD3 | 79,844 | 72,784 | 66,551 | 64,925 | 417 | 53.9 | 97.8 | 95.66 | 81.31 |
JSD4 | 79,995 | 74,039 | 68,474 | 66,006 | 415 | 54.11 | 97.77 | 95.63 | 82.51 |
JSD5 | 80,121 | 74,950 | 69,798 | 67,816 | 416 | 53.18 | 97.85 | 95.78 | 84.64 |
JSD6 | 80,349 | 74,416 | 69,006 | 66,212 | 415 | 53.65 | 97.72 | 95.57 | 82.41 |
Met1 | 79,977 | 72,743 | 66,571 | 63,895 | 416 | 53.38 | 97.75 | 95.57 | 79.89 |
Met2 | 79,879 | 67,384 | 57,445 | 55,569 | 413 | 53.77 | 97.59 | 95.36 | 69.57 |
Met3 | 79,823 | 71,404 | 63,046 | 61,126 | 417 | 54.16 | 97.86 | 95.77 | 76.58 |