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Table 3 Table 3: The changed mRNAs are regulated by miRNAs in CUMS-induced rat depression model under LBRD standard decoction treatments

From: Integrated analysis of the chemical-material basis and molecular mechanisms for the classic herbal formula of Lily Bulb and Rehmannia Decoction in alleviating depression

miRNAs

The predicted target mRNAs that match DEGs in transcriptomea

rno-miR-879-5p ↓

Calml4 ↑ Arc ↑ Gad1 ↑

rno-miR-7a-5p ↓

Slc39a12 ↑ Ntrk2 ↑ GAT-3 ↑

rno-miR-499-5p ↓

Calml4 ↑

rno-miR-495 ↓

GAT-3 ↑ Calml4 ↑ Tnfaip6 ↑ Arc ↑ Gad1↑ Bdnf ↑

rno-miR-204-5p ↓

Calml4 ↑ Ntrk2 ↑ VGAT ↑

rno-miR-199a-3p ↓

Foxs1 ↑ Ntrk2 ↑

rno-miR-151-3p ↓

Calml4 ↑ Ntrk2 ↑

rno-miR-144-3p ↓

Calml4 ↑ Ntrk2 ↑ VGAT ↑ Gad1↑

rno-miR-24-3p ↓

Nr1d1 ↑

rno-miR-25-3p ↓

Btg2 ↑ GAT-3 ↑ VGAT ↑

rno-miR-21-5p ↓

Btg2 ↑ Ntf3 ↑

rno-miR-494-3p ↑

Acvr1c ↓ Syt6 ↓

rno-miR-380-5p ↑

Acvr1c ↓

rno-miR-365-3p ↑

Syt6 ↓

rno-miR-34c-5p ↑

Flot2 ↓ Acvr1c ↓ Syt6 ↓ Il18bp ↓

rno-miR-346 ↑

Dbp ↓ Acvr1c ↓

rno-miR-31a-5p ↑

Flot2 ↓ Acvr1c ↓ Syt6 ↓

rno-miR-206-3p ↑

Dbp ↓ Acvr1c ↓

  1. aThe target predicted by TargetScan, Rnahybrid and Miranda, and then overlapped to DEGs in transcriptome. ↓, miRNA significantly down-regulated in LBRD standard decoction group vs CUMS group, and CUMS group vs control group; ↑, up-regulation