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Table 3 Sequence alignment among the matK forward primer 3 F Kim f and the corresponding binding sites of the Gentiana species available in NCBI

From: Evaluation of seven DNA barcodes for differentiating closely related medicinal Gentiana species and their adulterants

NCBI Accession no.

Scientific name

Sequence alignment

3 F Kim f sequence (5′ to 3′)

CGTACAGTACTTTTGTGTTTACGAG

EF552125.1

Gentiana acaulis

....T..A............C..G.

EF552079.1

Gentiana bavarica

....T..A............C..G.

EF552115.1

Gentiana bavarica subsp. subacaulis

....T..A............C..G.

EF552117.1

Gentiana brachyphylla

....T..A............C..G.

EF552116.1

Gentiana brachyphylla

....T..A............C..G.

EF552100.1

Gentiana brachyphylla

....T..A............C..G.

EF552102.1

Gentiana brachyphylla subsp. favratii

....T..A............C..G.

EF552101.1

Gentiana brachyphylla subsp. favratii

....T..A............C..G.

EF552124.1

Gentiana nivalis

....T..A............C..G.

EF552123.1

Gentiana nivalis

....T..A............C..G.

EF552122.1

Gentiana nivalis

....T..A............C..G.

EF552121.1

Gentiana nivalis

....T..A............C..G.

EF552126.1

Gentiana prostrata

....T..A.T..........C..G.

EF552120.1

Gentiana pumila

....T..A............C..G.

EF552086.1

Gentiana pumila subsp. delphinensis

....T..A............C..G.

EF552085.1

Gentiana pumila subsp. delphinensis

....T..A............C..G.

EF552114.1

Gentiana rostanii

....T..A............C..G.

EF552113.1

Gentiana rostanii

....T..A............C..G.

EF552078.1

Gentiana terglouensis

....T..A............C..G.

EF552107.1

Gentiana terglouensis subsp. schleicheri

....T..A............C..G.

EF552087.1

Gentiana terglouensis subsp. schleicheri

....T..A............C..G.

EF552119.1

Gentiana utriculosa

....T..A............C..G.

EF552118.1

Gentiana utriculosa

....T..A............C..G.

EF552105.1

Gentiana verna

....T..A............C..G.

EF552104.1

Gentiana verna

....T..A............C..G.

EF552103.1

Gentiana verna

....T..A............C..G.

EF552099.1

Gentiana verna

....T..A............C..G.

EF552098.1

Gentiana verna

....T..A............C..G.

EF552097.1

Gentiana verna

....T..A............C..G.

EF552096.1

Gentiana verna

....T..A............C..G.

EF552111.1

Gentiana verna subsp. balcanica

....T..A............C..G.

EF552106.1

Gentiana verna subsp. balcanica

....T..A............C..G.

EF552112.1

Gentiana verna subsp. pontica

....T..A............C..G.

EF552110.1

Gentiana verna subsp. pontica

....T..A............C..G.

EF552109.1

Gentiana verna subsp. pontica

....T..A............C..G.

EF552108.1

Gentiana verna subsp. tergestina

....T..A............C..G.

  1. Gentiana sequences downloaded from GenBank were converted into their reverse complement before alignment against 3 F Kim f.