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Table 2 Gene content of the A. compactum cp genome

From: Complete chloroplast genome of the medicinal plant Amomum compactum: gene organization, comparative analysis, and phylogenetic relationships within Zingiberales

Gene category Gene group Gene name
Self-replication rRNA genes rrn16c, rrn23c, rrn5c, rrn4.5c
tRNA genes trnH-GUGc, trnK-UUUa, trnQ-UUG, trnS-GCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnR-UCU, trnT-GGU, trnS-UGA, trnG-GCCc, trnfM-CAU, trnS-GGA, trnT-UGU, trnL-UAAa, trnF-GAA, trnV-UACa, trnW-CCA, trnP-UGG, trnI-CAUc, trnL-CAAc, trnV-GACc, trnI-GAUa, c, trnA-UGCa, c, trnR-ACGc, trnN-GUUc, trnL-UAG, trnM-CAU
Small subunit of ribosome rps4, rps14, rps18, rps2, rps12b, c, rps11, rps8, rps3, rps19, rps7c, rps15, rps16a
Large subunit of ribosome rpl33, rpl20, rpl36, rpl14, rpl16a, rpl22, rpl2a, c, rpl23c, rpl32
DNA dependent RNA polymerase rpoB, rpoC1a, rpoC2, rpoA
Translational initiation factor infA
Genes for photosynthesis Subunits of NADH dehydrogenase ndhAa, ndhBa, c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ, ycf3b, ycf4
Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ
Subunits of cytochrome b/f complex petN, petA, petL, petG, petBa, petD
Subunits of ATP synthase atpI, atpH, atpFa, atpA, atpE, atpB
Large subunit of rubisco rbcL
Genes of unknown function Open reading frames (ORF, ycf) ycf1, ycf15c, ycf2c
Pseudogenes ycf1
  1. aGene with one intron
  2. bGene with two introns
  3. cGene with two copies