Table 2 Gene content of the A. compactum cp genome

Self-replication

rRNA genes

rrn16^c, rrn23^c, rrn5^c, rrn4.5^c

tRNA genes

trnH-GUG^c, trnK-UUU^a, trnQ-UUG, trnS-GCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnR-UCU, trnT-GGU, trnS-UGA, trnG-GCC^c, trnfM-CAU, trnS-GGA, trnT-UGU, trnL-UAA^a, trnF-GAA, trnV-UAC^a, trnW-CCA, trnP-UGG, trnI-CAU^c, trnL-CAA^c, trnV-GAC^c, trnI-GAU^{a, c}, trnA-UGC^{a, c}, trnR-ACG^c, trnN-GUU^c, trnL-UAG, trnM-CAU

Small subunit of ribosome

rps4, rps14, rps18, rps2, rps12^{b, c}, rps11, rps8, rps3, rps19, rps7^c, rps15, rps16^a

Large subunit of ribosome

rpl33, rpl20, rpl36, rpl14, rpl16^a, rpl22, rpl2^{a, c}, rpl23^c, rpl32

DNA dependent RNA polymerase

rpoB, rpoC1^a, rpoC2, rpoA

Translational initiation factor

infA

Genes for photosynthesis

Subunits of NADH dehydrogenase

ndhA^a, ndhB^{a, c}, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ, ycf3^b, ycf4

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of cytochrome b/f complex

petN, petA, petL, petG, petB^a, petD

Subunits of ATP synthase

atpI, atpH, atpF^a, atpA, atpE, atpB

Large subunit of rubisco

rbcL

Genes of unknown function

Open reading frames (ORF, ycf)

ycf1, ycf15^c, ycf2^c

Pseudogenes

ycf1