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Table 2 miRNAs with quantitative change over 1.5 folds and their characteristics in rats mFPC tissues

From: Integrated analysis of the chemical-material basis and molecular mechanisms for the classic herbal formula of Lily Bulb and Rehmannia Decoction in alleviating depression

miRNA

Accession no

Control Means

CUMS Means

LBRD Means

Fold Change CUMS/Control

Fold Change LBRD /CUMS

Chromosomal location (Rat)

Seed sequence

rno-miR-144-3p

MIMAT0000850

19.55

57.73

28.54

2.95

0.49

chr10: 65,291,365–65,291,447 [−]

5′-ACAGUAU-3′

rno-miR-7a-5p

MIMAT0000606

376.61

995.99

450.90

2.64

0.45

chr17: 6,675,016–6,675,112 [+]

5′-GGAAGAC-3′

rno-miR-495

MIMAT0005320

589.33

1520.44

472.28

2.58

0.31

chr6: 133,868,288–133,868,367 [+]

5′-AACAAAC-3′

rno-miR-204-5p

MIMAT0000877

249.69

458.77

296.66

1.84

0.65

chr1: 240,403,000–240,403,109 [+]

5′-UCCCUUU-3′

rno-miR-24-3p

MIMAT0000794

2808.93

5124.21

3378.83

1.82

0.66

chr17: 823,968–824,035 [+]

5′-GGCUCAG-3′

rno-miR-25-3p

MIMAT0000795

92.61

161.63

60.95

1.75

0.38

chr12: 19,307,340–19,307,423 [−]

5′-AUUGCAC-3′

rno-miR-879-5p

MIMAT0005287

1.64

2.83

1.84

1.72

0.65

chr4: 21,673,635–21,673,710 [−]

5′-GAGGCUU-3′

rno-miR-21-5p

MIMAT0000790

226.30

388.76

225.74

1.72

0.58

chr10: 73,902,210–73,902,301 [−]

5′-AGCUUAU-3′

rno-miR-187-3p

MIMAT0000864

18.06

28.21

14.69

1.56

0.52

chr18: 16,390,507–16,390,610 [−]

5′-CGUGUCU-3′

rno-miR-499-5p

MIMAT0003381

50.17

77.94

49.90

1.55

0.64

chr3: 151,138,862–151,138,926 [+]

5′-UAAGACU-3′

rno-miR-151-3p

MIMAT0000614

199.05

307.84

189.36

1.55

0.62

chr7: 114,485,547–114,485,643 [−]

5′-UAGACUG-3′

rno-miR-199a-3p

MIMAT0004738

38.68

59.63

33.12

1.54

0.56

chr13: 80,125,487–80,125,596 [+]

5′-CAGUAGU-3′

rno-miR-31a-5p

MIMAT0000810

9.31

5.96

10.80

0.64

1.81

chr5: 107,206,515–107,206,620 [+]

5′-GGCAAGA-3′

rno-miR-138-5p

MIMAT0000844

201.37

117.04

182.95

0.58

1.56

chr19: 11,149,748–11,149,829 [−]

5′-GCUGGUG-3′

rno-miR-380-5p

MIMAT0005308

34.22

18.97

30.84

0.55

1.63

chr6: 133,860,490–133,860,566 [+]

5′-UGGUUGA-3′

rno-miR-34c-5p

MIMAT0000814

226.02

119.97

200.35

0.53

1.67

chr8: 55,492,024–55,492,100 [−]

5′-GGCAGUG-3′

rno-miR-322-5p

MIMAT0001619

26.03

12.60

19.87

0.48

1.58

chrX: 158,148,161–158,148,255 [+]

5′-AGCAGCA-3′

rno-miR-365-3p

MIMAT0001549

19.22

8.93

15.03

0.46

1.68

chr10: 67,079,796–67,079,881 [+]

5′-AAUGCCC-3′

rno-miR-494-3p

MIMAT0003193

5.95

2.53

4.32

0.42

1.71

chr6: 133,864,370–133,864,452 [+]

5′-GAAACAU-3′

rno-miR-346

MIMAT0000596

14.08

5.70

9.28

0.40

1.63

chr16: 11,250,054–11,250,151 [+]

5′-GUCUGCC-3′

rno-miR-206-3p

MIMAT0000879

14.37

5.17

11.71

0.36

2.27

chr9: 26,791,764–26,791,847 [+]

5′-GGAAUGU-3′