Table 1 Summary of VDL genome assemblies and mapping by NGS reads
Assembly | CCS-hifiasm | ONT-nextdenovo | ONT-necat | ONT-wtdbg |
|---|---|---|---|---|
Size (Gb) | 3.55 | 4.28 | 3.75 | 3.45 |
N50 (Mb) | 2.22 | 5.64 | 1.20 | 0.05 |
Complete BUSCOs (%) | 92.63 | 90.09 | 87.92 | 77.51 |
NGS mapped rate (%) | 99.60 | 99.60 | 99.52 | 99.29 |
NGS properly paired (%) | 96.17 | 91.44 | 90.36 | 85.03 |
Depth (X) | 36.62 | 30.25 | 34.36 | 35.52 |
Coverage (%) | 99.53 | 75.70 | 76.31 | 49.15 |
Coverage % (≥ 5×) | 98.26 | 69.92 | 71.12 | 45.60 |
Coverage % (≥ 10×) | 93.50 | 61.99 | 64.11 | 40.01 |
Coverage % (≥ 20×) | 72.31 | 42.18 | 45.90 | 33.32 |