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Table 1 Preparation and execution of latent tree analysis

From: Quantification of prevalence, clinical characteristics, co-existence, and geographic variations of traditional Chinese medicine diagnostic patterns via latent tree analysis-based differentiation rules among functional dyspepsia patients

Stepa

Procedure

(i)

Statistical pattern discovery

Build three independent global latent tree models on the Lantern software

Choose the model with the best BIC score for subsequent steps

Obtain probabilistic co-occurring clinical features from each latent variable

(ii)

Statistical pattern interpretation

Examine the quantitative relationships between latent variables and constituting clinical features by checking relevant probability distributions on Lantern

Determine the TCM diagnostic pattern connotations for the latent variables from clinical perspective with TCM expertise

Generate a list of potential TCM diagnostic patterns

(iii)

Traditional Chinese Medicine diagnostic pattern identification

Based on TCM expertise, select only the potential TCM diagnostic patterns that contain all essential clinical features for subsequent steps

Discard those that do not contain all essential clinical features

(iv)

Traditional Chinese Medicine diagnostic pattern quantification

Construct a local latent tree model for each selected TCM diagnostic pattern on Lantern

(v)

Traditional Chinese Medicine pattern differentiation rule derivation

Apply the local latent tree models to classify the participants

Assign a soft label to each participant based on the probability of belonging to each TCM diagnostic pattern

Derive score-based differentiation rules using the Naïve Bayes approachb

  1. BIC Bayesian information criterion, TCM Traditional Chinese Medicine, TCMQ-FD Traditional Chinese Medicine Clinical Feature Questionnaire for Functional Dyspepsia
  2. aThis study involved three datasets. Steps (i) to (iv) were performed using the overall sample dataset. In Step (v), the local latent tree models constructed were used to classify and label the participants in the Hong Kong sample and the Hunan sample, and derive relevant pattern differentiation rules for the two samples
  3. bSee Zhang et al. [26] for details