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Table 4 33 differentially expressed lncRNAs identified from 2 lncRNA arrays (Control vs CIA, BZXD vs CIA)

From: An intersectional analysis of LncRNAs and mRNAs reveals the potential therapeutic targets of Bi Zhong Xiao Decoction in collagen-induced arthritis rats

Transcript_ID

P value

Fold change

Regulation

Chrom

Strand

Relationship

Control/CIA

BZXD/CIA

Control/CIA

BZXD/CIA

Control/CIA

BZXD/CIA

ENSRNOT00000077623

0.0454

0.0000

4.07

104.02

Down

up

chr1

−

Exon sense-overlapping

ENSRNOT00000084356

0.0452

0.0000

3.13

70.79

Down

Up

chr18

 + 

Intergenic

ENSRNOT00000090476

0.0402

0.0000

4.43

39.24

Down

Up

chr3

 + 

Intergenic

ENSRNOT00000079825

0.0471

0.0000

4.77

32.76

Down

Up

chr2

 + 

Intergenic

ENSRNOT00000088010

0.0391

0.0000

2.51

25.29

Down

Up

chr3

 + 

Intergenic

ENSRNOT00000092850

0.0156

0.0000

2.54

18.57

Down

Up

chr12

 + 

Intron sense-overlapping

uc.361−

0.0000

0.0009

4.89

111.56

Up

Down

chr6

−

Intergenic

ENSRNOT00000092834

0.0001

0.0016

5.51

79.60

Up

Down

chr8

−

Intergenic

ENSRNOT00000089244

0.0016

0.0013

3.81

59.99

Up

Down

chr11

−

Intergenic

ENSRNOT00000090140

0.0014

0.0010

3.86

40.06

Up

Down

chr6

 + 

Intergenic

ENSRNOT00000076778

0.0001

0.0013

9.05

39.34

Up

Down

chrX

 + 

Intergenic

ENSRNOT00000084631

0.0009

0.0011

4.49

23.51

Up

Down

chr10

 + 

Intergenic

XR_594820

0.0000

0.0001

3.57

22.94

Up

Down

chr15

−

Intergenic

XR_343493

0.0023

0.0001

4.11

17.93

Up

Down

chr1

−

Intergenic

uc.183−

0.0000

0.0018

16.59

14.56

Up

Down

chr10

 + 

Exon sense-overlapping

XR_589160

0.0027

0.0055

4.67

10.53

Up

Down

chr8

 + 

Intergenic

ENSRNOT00000080854

0.0031

0.0002

2.40

9.53

Up

Down

chr8

−

Intergenic

ENSRNOT00000083731

0.0066

0.0000

2.26

6.85

Up

Down

chr8

−

Intergenic

uc.229−

0.0005

0.0000

2.26

6.74

Up

Down

chr4

−

Intergenic

XR_590741

0.0002

0.0001

3.93

6.16

Up

Down

chr1

 + 

Intergenic

ENSRNOT00000089400

0.0016

0.0000

2.12

5.92

Up

Down

chr20

−

Intergenic

uc.301−

0.0017

0.0009

2.45

5.87

Up

Down

chr1

−

Intronic antisense

XR_342867

0.0116

0.0043

2.24

5.83

Up

Down

chr1

 + 

Intergenic

XR_592829

0.0004

0.0045

8.76

5.54

Up

Down

chr6

 + 

Intergenic

uc.279 + 

0.0042

0.0001

2.53

4.92

Up

Down

chr3

−

Intron sense-overlapping

XR_359049

0.0018

0.0001

2.42

4.32

Up

Down

chr13

 + 

Intergenic

XR_592983

0.0000

0.0000

2.41

4.23

Up

Down

chr6

−

Intronic antisense

uc.72 + 

0.0044

0.0002

2.17

3.70

Up

Down

chr3

 + 

Intronic antisense

XR_601424

0.0150

0.0075

2.60

3.69

Up

Down

chr6

 + 

Exon sense-overlapping

ENSRNOT00000080985

0.0034

0.0057

2.84

3.38

Up

Down

chr17

 + 

Intergenic

XR_345040

0.0237

0.0023

2.03

3.27

Up

Down

chr3

 + 

Intergenic

ENSRNOT00000077852

0.0040

0.0001

2.05

2.94

Up

Down

chr1

−

Intergenic

XR_341569

0.0022

0.0069

2.31

2.61

Up

Down

chr17

 + 

Intergenic

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